A list of publications from my lab and with my collaborators.

128 entries « 1 of 3 »

2016

Yuen, Douglas; Cartwright, Stephen; Jacob, Christian

Eukaryo: Virtual Reality Simulation of a Cell Inproceedings

Proceedings of the 2016 Virtual Reality International Conference, pp. 3:1–3:4, ACM, Laval, France, 2016, ISBN: 978-1-4503-4180-6.

Abstract | Links | BibTeX

Yuen, Douglas; Santoso, Markus; Cartwright, Stephen; Jacob, Christian

Eukaryo: An AR and VR Application for Cell Biology. Journal Article

International Journal of Virtual Reality, 16 (1), 2016.

Abstract | Links | BibTeX

Kelly, Justin; Jacob, Christian

evoVision3D: A Multiscale Visualization of Evolutionary Histories Inproceedings

International Conference on Parallel Problem Solving from Nature, pp. 942–951, Springer 2016.

Abstract | Links | BibTeX

Kelly, Justin; Jacob, Christian

evoVersion: visualizing evolutionary histories Inproceedings

Evolutionary Computation (CEC), 2016 IEEE Congress on, pp. 814–821, IEEE 2016.

Abstract | Links | BibTeX

Maia, Rafael Simon; Jacob, Christian; Hara, Amy K; Silva, Alvin C; Pavlicek, William; Mitchell, Ross J

Adaptive noise correction of dual-energy computed tomography images Journal Article

International journal of computer assisted radiology and surgery, 11 (4), pp. 667–678, 2016.

Abstract | Links | BibTeX

Yuen, Douglas; Jacob, Christian

Eukaryo: An Agent-based, Interactive Simulation of a Eukaryotic Cell Inproceedings

Proceedings of the Artificial Life Conference 2016, pp. 562–569, MIT Press, Cambridge, MA, 2016.

Abstract | Links | BibTeX

Wu, Andrew; Davison, Timothy; Jacob, Christian

A 3D Multiscale Model of Chemotaxis in Bacteria Inproceedings

Proceedings of the Artificial Life Conference 2016, pp. 546–553, MIT Press, Cambridge, MA, 2016.

Abstract | Links | BibTeX

Golan, Rotem; Jacob, Christian; Denzinger, Joerg

Lung nodule detection in CT images using deep convolutional neural networks Inproceedings

Neural Networks (IJCNN), 2016 International Joint Conference on, pp. 243–250, IEEE 2016.

Abstract | Links | BibTeX

2015

Esmaeili, Afshin ; Davison, Timothy ; Wu, Andrew ; Alcantara, Joenel ; Jacob, Christian

PROKARYO: an illustrative and interactive computational model of the lactose operon in the bacterium Escherichia coli Journal Article

BMC bioinformatics, 16 (1), pp. 311, 2015.

Abstract | Links | BibTeX

Hoerzer, Stefan ; von Tscharner, Vinzenz ; Jacob, Christian ; Nigg, Benno M

Defining functional groups based on running kinematics using Self-Organizing Maps and Support Vector Machines Journal Article

Journal of biomechanics, 48 (10), pp. 2072–2079, 2015.

Abstract | Links | BibTeX

Maia, Rafael Simon; Jacob, Christian; Hara, Amy K; Silva, Alvin C; Pavlicek, William; Ross, Mitchell J

An algorithm for noise correction of dual-energy computed tomography material density images Journal Article

International journal of computer assisted radiology and surgery, 10 (1), pp. 87–100, 2015.

Abstract | Links | BibTeX

2014

Bhalla, Navneet ; Bentley, Peter J; Vize, Peter D; Jacob, Christian

Staging the self-assembly process: Inspiration from biological development Journal Article

Artificial life, 20 (1), pp. 29–53, 2014.

Abstract | Links | BibTeX

Shirazi, Abbas Sarraf ; Davison, Timothy ; von Mammen, Sebastian ; Denzinger, J{"o}rg ; Jacob, Christian

Adaptive agent abstractions to speed up spatial agent-based simulations Journal Article

Simulation Modelling Practice and Theory, 40 , pp. 144–160, 2014.

Abstract | Links | BibTeX

Hasan, Mahmudul ; Samavati, Faramarz F; Jacob, Christian

Multilevel focus+ context visualization using balanced multiresolution Inproceedings

Cyberworlds (CW), 2014 International Conference on, pp. 145–152, IEEE 2014.

Abstract | Links | BibTeX

Golan, Rotem ; Jacob, Christian ; Grewal, Savraj ; Denzinger, J{"o}rg

Predicting patterns of gene expression during drosophila embryogenesis Inproceedings

Proceedings of the 2014 Annual Conference on Genetic and Evolutionary Computation, pp. 269–276, ACM 2014.

Abstract | Links | BibTeX

2013

Maia, Rafael Simon ; Jacob, Christian ; Mitchell, Ross J; Hara, Amy K; Silva, Alvin C; Pavlicek, William

Parallel multi-material decomposition of Dual-Energy CT data Inproceedings

Proceedings of the 26th IEEE International Symposium on Computer-Based Medical Systems, 2013.

Abstract | Links | BibTeX

Maia, Rafael Simon ; Jacob, Christian ; Mitchell, Ross J; Hara, Amy K; Silva, Alvin C; Pavlicek, William

Parallel multi-material decomposition of Dual-Energy CT data Inproceedings

Computer-Based Medical Systems (CBMS), 2013 IEEE 26th International Symposium on, pp. 465–468, IEEE 2013.

Abstract | Links | BibTeX

Sarpe, Vladimir ; Jacob, Christian

Simulating the decentralized processes of the human immune system in a virtual anatomy model Journal Article

BMC bioinformatics, 14 (6), pp. S2, 2013.

Abstract | Links | BibTeX

Tworek, Janet K; Jamniczky, Heather A; Jacob, Christian ; Hallgr{'i}msson, Benedikt ; Wright, Bruce

The LINDSAY Virtual Human Project: An immersive approach to anatomy and physiology Journal Article

Anatomical sciences education, 6 (1), pp. 19–28, 2013.

Abstract | Links | BibTeX

Sarraf Shirazi, Abbas ; Von Mammen, Sebastian ; Jacob, Christian

Abstraction of agent interaction processes: Towards large-scale multi-agent models Journal Article

Simulation, 89 (4), pp. 524–538, 2013.

Abstract | Links | BibTeX

2012

Amorim, Ronan Mendon{ç}a ; Campos, Ricardo Silva ; Lobosco, Marcelo ; Jacob, Christian ; dos Santos, Rodrigo Weber

An electro-mechanical cardiac simulator based on cellular automata and mass-spring models Incollection

Cellular Automata, pp. 434–443, Springer, 2012.

Abstract | Links | BibTeX

Von Mammen, Sebastian ; Phillips, David ; Davison, Timothy ; Jamniczky, Heather ; Hallgr{'i}msson, Benedikt ; Jacob, Christian

Swarm-based computational development Incollection

Morphogenetic Engineering, pp. 473–499, Springer, 2012.

Abstract | Links | BibTeX

Jacob, Christian ; von Mammen, Sebastian ; Davison, Timothy ; Sarraf-Shirazi, A; Sarpe, Vladimir ; Esmaeili, Afshin ; Phillips, David ; Yazdanbod, Iman ; Novakowski, Scott ; Steil, Scott ; others,

Lindsay virtual human: Multi-scale, agent-based, and interactive Incollection

Advances in Intelligent Modelling and Simulation, pp. 327–349, Springer, 2012.

Abstract | Links | BibTeX

von Mammen, Sebastian ; Sarraf Shirazi, Abbas ; Sarpe, Vladimir ; Jacob, Christian

Optimization of swarm-based simulations Journal Article

ISRN Artificial Intelligence, 2012 , 2012.

Abstract | Links | BibTeX

Bhalla, Navneet ; Bentley, Peter J; Vize, Peter D; Jacob, Christian

Programming and evolving physical self-assembling systems in three dimensions Journal Article

Natural Computing, 11 (3), pp. 475–498, 2012.

Abstract | Links | BibTeX

2011

Bhalla, Navneet ; Bentley, Peter ; Vice, Peter ; Jacob, Christian

Staging the Self-Assembly Process Using Morphological Information Conference

ECAL 2011 - 20th European Conference on Artificial Life, Paris, France, 2011.

Abstract | Links | BibTeX

Shirazi, Abbas Sarraf; von Mammen, Sebastian; Yazdanbod, Iman ; Jacob, Christian

Self-Organized Learning of Collective Behaviours in Agent-Based Simulations Conference

ICCS 2011 - 8th International Conference on Complex Systems, NECSI Knowledge Press NECSI Knowledge Press, Boston, MA, USA, 2011, ISBN: 978-0-9656328-4-3.

Abstract | Links | BibTeX

Tsang, Herbert H; Jacob, Christian

RNADPCompare: an algorithm for comparing RNA secondary structures based on image processing techniques Inproceedings

Evolutionary Computation (CEC), 2011 IEEE Congress on, pp. 1288–1295, IEEE 2011.

Abstract | Links | BibTeX

Shirazi, Abbas Sarraf ; von Mammen, Sebastian ; Jacob, Christian

Hierarchical self-organized learning in agent-based modeling of the MAPK signaling pathway Inproceedings

Evolutionary Computation (CEC), 2011 IEEE Congress on, pp. 2245–2251, IEEE 2011.

Abstract | Links | BibTeX

von Mammen, Sebastian ; Stegh{"o}fer, Jan-Philipp ; Denzinger, J{"o}rg ; Jacob, Christian

Self-organized middle-out abstraction Inproceedings

International Workshop on Self-Organizing Systems, pp. 26–31, Springer 2011.

Abstract | Links | BibTeX

Jacob, Christian ; Sarpe, Vladimir ; Gingras, Carey ; Feyt, Rolando Pajon

Swarm-based simulations for immunobiology Incollection

Information Processing and Biological Systems, pp. 29–64, Springer, 2011.

Abstract | Links | BibTeX

von Mammen, Sebastian ; Wi{ß}meier, Thomas ; Wong, Joyce ; Jacob, Christian

Artistic exploration of the worlds of digital developmental swarms Journal Article

Leonardo, 44 (1), pp. 5–13, 2011.

Abstract | Links | BibTeX

2010

von Mammen, Sebastian; Wissmeier, S; Wong, T; Jacob, Christian

Artistic Exploration of the Worlds of Digital Developmental Swarms Journal Article

LEONARDO, 2010.

BibTeX

Pilat, Marcin L; Jacob, Christian

Evolution of Vision Capabilities in Embodied Virtual Creatures Conference

GECCO 2010: Genetic and Evolutionary Computation Conference, Portland, Oregon, USA, 2010.

Abstract | Links | BibTeX

von Mammen, Sebastian; Davison, Timothy ; Baghi, Hamid ; Jacob, Christian

Component-Based Networking for Simulations in Medical Education Conference

MediaWiN 2010: 5th IEEE Workshop on multiMedia Applications over Wireless Networks, Ricione, Italy, 2010.

Abstract | Links | BibTeX

Sarpe, Vladimir ; Esmaeili, Afshin ; Yazdanbod, Iman ; Kubik, Thane ; Richter, Michael ; Jacob, Christian

Parametric evolution of a bacterial signalling system formalized by membrane computing Inproceedings

Evolutionary Computation (CEC), 2010 IEEE Congress on, pp. 1–8, IEEE 2010.

Abstract | Links | BibTeX

Pilat, Marcin L; Jacob, Christian

Evolution of vision capabilities in embodied virtual creatures Inproceedings

Proceedings of the 12th annual conference on Genetic and evolutionary computation, pp. 95–102, ACM 2010.

Abstract | Links | BibTeX

Tsang, Herbert H; Jiang, Tiancheng ; Wiese, Kay C; Jacob, Christian

A study of rna secondary structure prediction using different mutation operators Inproceedings

Evolutionary Computation (CEC), 2010 IEEE Congress on, pp. 1–7, IEEE 2010.

Abstract | Links | BibTeX

Bhalla, Navneet ; Bentley, Peter J; Jacob, Christian

Evolving physical self-assembling systems in two-dimensions Inproceedings

International Conference on Evolvable Systems, pp. 381–392, Springer 2010.

Abstract | Links | BibTeX

Davison, Timothy ; von Mammen, Sebastian ; Jacob, Christian

Evoshelf: a system for managing and exploring evolutionary data Inproceedings

International Conference on Parallel Problem Solving from Nature, pp. 310–319, Springer 2010.

Abstract | Links | BibTeX

Shirazi, Abbas Sarraf ; von Mammen, Sebastian ; Jacob, Christian

Adaptive modularization of the MAPK signaling pathway using the multiagent paradigm Inproceedings

International Conference on Parallel Problem Solving from Nature, pp. 401–410, Springer 2010.

Abstract | Links | BibTeX

Khemka, Namrata ; Jacob, Christian

VISPLORE: Exploring Particle Swarms by Visual Inspection Incollection

Agent-Based Evolutionary Search, pp. 255–284, Springer, 2010.

Abstract | Links | BibTeX

von Mammen, Sebastian; Phillips, David ; Davison, Timothy ; Jacob, Christian

Swarm Graph Grammars: A Scale-independent, Graph-based Multi-agent Representation Conference

ANTS 2010 - 7th International Conference on Swarm Intelligence, Brussels, Belgium, 2010.

Abstract | BibTeX

2009

Boyd, Jeffrey E; Hushlak, Gerald ; Jacob, Christian

Video Interaction for Swarm Art Inproceedings

MAST 2009: The Future of Interactive Media: Workshop on Media Arts, Science, and Technology, Santa Barbara, CA, 2009.

BibTeX

Moniz, Ryan D; Jacob, Christian

Fractal evolver: Interactive evolutionary design of fractals with grid computing Inproceedings

Workshops on Applications of Evolutionary Computation, pp. 442–451, Springer 2009.

Abstract | Links | BibTeX

Khemka, Namrata ; Jacob, Christian

VISPLORE: a toolkit to explore particle swarms by visual inspection Inproceedings

Proceedings of the 11th Annual conference on Genetic and evolutionary computation, pp. 41–48, ACM 2009.

Links | BibTeX

Von Mammen, Sebastian ; Jacob, Christian

The evolution of swarm grammars-growing trees, crafting art, and bottom-up design Journal Article

IEEE Computational Intelligence Magazine, 4 (3), 2009.

Abstract | Links | BibTeX

von Mammen, Sebastian ; Novakowski, Scott ; Hushlak, Gerald ; Jacob, Christian

Evolutionary swarm design: How can swarm-based systems help to generate and evaluate designs Journal Article

DESIGN Principles & Practices: An International Journal, 3 , pp. 371–386, 2009.

Abstract | Links | BibTeX

Esmaeili, Afshin ; Jacob, Christian

A multi-objective differential evolutionary approach toward more stable gene regulatory networks Journal Article

Biosystems, 98 (3), pp. 127–136, 2009.

Abstract | Links | BibTeX

Khemka, Namrata; Hushlak, Gerald; Jacob, Christian

Interactive Evolutionary Evaluation through Spatial Partitioning of Fitness Zones Conference

evoINTERACTION 2009, 3rd European Workshop on Interactive Evolution and Humanised Computational Intelligence, 2009.

Abstract | Links | BibTeX

128 entries « 1 of 3 »